public class Main
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static int |
captureProbeLength |
static boolean |
coverageBasedOnGCcontent |
static double |
coverageMeanGCcontentSpread |
static double |
coverageMeanPeak |
static double |
coverageMeanPeakGCcontent |
static double |
coverageSD |
static java.lang.String |
DEBUG_NUCLEOBASES |
static java.lang.String |
DEBUG_NUCLEOBASES_NUC_IDS |
static java.lang.String |
DEBUG_NUCLEOBASES_PE_IDS |
static java.lang.String |
DEFAULT_OUTPUT |
static java.lang.String |
endSequenceIdentifier |
static java.lang.String |
fastq1ForQualityScores |
static java.lang.String |
fastq2ForQualityScores |
static java.util.logging.Logger |
logger |
static int |
logRegionStats |
static int |
nucleobaseBufferSize |
static java.lang.String |
outputFormat |
static java.lang.String |
outputPath |
static int |
readLength |
static int |
readsContainingNfilter |
static java.lang.String |
referenceGenomePath |
static boolean |
simulateErrorInRead |
static int |
startingX |
static int |
startingY |
static java.lang.String |
startSequenceIdentifier |
static int |
templateLengthMean |
static double |
templateLengthSD |
static java.util.ArrayList<java.util.HashMap<java.lang.String,java.lang.String>> |
userArgsInfoArrayList |
static boolean |
useRealQualityScores |
Constructor and Description |
---|
Main() |
Modifier and Type | Method and Description |
---|---|
static void |
main(java.lang.String[] args)
Check whether the user's command is valid for artificial fastq generation.
|
public static java.lang.String outputPath
public static java.lang.String referenceGenomePath
public static java.lang.String startSequenceIdentifier
public static java.lang.String fastq1ForQualityScores
public static java.lang.String fastq2ForQualityScores
public static int captureProbeLength
public static boolean coverageBasedOnGCcontent
public static double coverageMeanPeak
public static double coverageMeanPeakGCcontent
public static double coverageMeanGCcontentSpread
public static double coverageSD
public static java.lang.String DEBUG_NUCLEOBASES
public static java.lang.String DEBUG_NUCLEOBASES_NUC_IDS
public static java.lang.String DEBUG_NUCLEOBASES_PE_IDS
public static java.lang.String DEFAULT_OUTPUT
public static java.lang.String endSequenceIdentifier
public static int logRegionStats
public static int nucleobaseBufferSize
public static java.lang.String outputFormat
public static int readsContainingNfilter
public static int readLength
public static boolean simulateErrorInRead
public static int startingX
public static int startingY
public static int templateLengthMean
public static double templateLengthSD
public static boolean useRealQualityScores
public static final java.util.logging.Logger logger
public static java.util.ArrayList<java.util.HashMap<java.lang.String,java.lang.String>> userArgsInfoArrayList