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randNumGenerator
- Static variable in class artificialFastqGenerator.
ArtificialFastqGenerationUtils
Read
- Class in
artificialFastqGenerator
An instance of this class corresponds to a read in an artificial fastq file.
Read(ArrayList<Nucleobase>, long, Read, boolean, char[], char[], int, int)
- Constructor for class artificialFastqGenerator.
Read
Initialise a new Read object.
readLength
- Static variable in class artificialFastqGenerator.
Main
readsContainingNfilter
- Static variable in class artificialFastqGenerator.
Main
referenceGenomePath
- Static variable in class artificialFastqGenerator.
Main
resetFieldsForNewChromosome()
- Method in class artificialFastqGenerator.
NucleobaseAndReadFactory
Reset fields ready to process a new chromosome.
resetNumBaseCallErrors()
- Method in class artificialFastqGenerator.
QualityScoreAndErrorGenerator
Reset the number of simulated base call errors to 0.
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